Phenotypic and Genotypic Diversity of Rhizobia


by

Neelawan Pongsilp

DOI: 10.2174/97816080546191120101
eISBN: 978-1-60805-461-9, 2012
ISBN: 978-1-60805-552-4



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Indexed in: Scopus, EBSCO.

Rhizobia are composed of specific groups of bacteria that have the ability to induce symbiotic nitrogen-fixing nodules on the roots or...[view complete introduction]

Table of Contents

Foreword

- Pp. i-ii (2)

Pongrawee Nimnoi

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Preface

- Pp. iii-iv (2)

Neelawan Pongsilp

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Classification and Taxonomy of Rhizobia

- Pp. 3-48 (46)

Neelawan Pongsilp

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Phenotypic Diversity of Rhizobia Assessed by Numerical Analysis, Enzyme Pattern and Serological Study

- Pp. 49-72 (24)

Neelawan Pongsilp

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Symbiotic Variation and Plant-Growth-Promoting Traits of Rhizobia

- Pp. 73-92 (20)

Neelawan Pongsilp

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Genotypic Diversity of Rhizobia Assessed by Plasmid Profile

- Pp. 93-106 (14)

Neelawan Pongsilp

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Genotypic Diversity of Rhizobia Assessed by Polymerase Chain Reaction (PCR) Fingerprinting

- Pp. 107-124 (18)

Neelawan Pongsilp

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Genotypic Diversity of Rhizobia Assessed by Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCRRFLP)

- Pp. 125-135 (11)

Neelawan Pongsilp

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Genotypic Diversity of Rhizobia Assessed by Restriction Fragment Length Polymorphism (RFLP)

- Pp. 136-153 (18)

Neelawan Pongsilp

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Genotypic Diversity of Rhizobia Assessed by Sequence Analysis

- Pp. 154-175 (22)

Neelawan Pongsilp

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Application of Rhizobia in Agriculture

- Pp. 176-187 (12)

Neelawan Pongsilp

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Index

- Pp. 188-194 (7)

Neelawan Pongsilp

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Foreword

It is such an honor and I have a great pleasure to write a foreword for this special book, “PHENOTYPIC AND GENOTYPIC DIVERSITY OF RHIZOBIA”, written by Dr. Neelawan Pongsilp.

Rhizobia are defined as bacteria that induce nitrogen-fixing nodules on roots and stems of legumes. Members of rhizobia have expanded from the only one genus, Rhizobium, in the early 80’s to 17 genera identified up to date. The classification and taxonomy of rhizobia have been revised periodically. Many rhizobial strains have been moved into the other genera and species. Novel genera and species of rhizobia in the alpha (?), beta (?) and gamma (?) subclasses of Proteobacteria have been proposed as well. The diversity of rhizobia has been assessed based on phenotypic and genotypic characteristics. The genetic relationships among rhizobial populations are of interest because they can provide the information on the gene transfer and the adaptation of bacteria to environments. Despite increasing studies on rhizobial diversity and their importance in sustainable agriculture world-wide, the gathering information is quite rare.

This book provides valuable information. It covers the main concepts in classification and taxonomy of rhizobia. It brings the categories and techniques used to examine the phenotypic and genotypic diversity of rhizobia, from principle to application for rhizobial members. The techniques described in the book include numerical analysis, enzyme pattern, serological study, plasmid profile, PCR fingerprinting, PCR-RFLP, RFLP, IS fingerprint and sequence analysis. The discriminating power and limitations of these techniques are discussed and compared. The plant-growth promoting abilities of rhizobia are also provided. In this book, the information is gathered to well-organized and easily comparable formats. It rises up the new aspects on the symbiotic promiscuity and genetic relatedness of rhizobia.

The author, Dr. Neelawan Pongsilp, has a vast experience in bacterial diversity and community, especially rhizobia. Her research articles published in the peer-reviewed journals prove her well qualified for writing on this topic. She pushes the Rhizobia world forward with her slender frame. For years, I’ve admired her devotion to researches and got inspired by her hard work, professional skills and opinions. As I know that she’s made an excellent effort in writing this book, she achieves a good progress in providing a useful resource of knowledge. This book will benefit the readers in microbiological and molecular biological fields.

Pongrawee Nimnoi, Ph.D.
Department of Microbiology
Faculty of Liberal Arts and Sciences
Kasetsart University
Nakhon Pathom
Thailand


Preface

I would like to take this opportunity to mention briefly and express my aim about this book.

Rhizobia are composed of specific groups of bacteria that have the ability to induce symbiotic nitrogen-fixing nodules on the roots or stems of leguminous plants. Rhizobia have attracted a great attention for more than 4 decades because of their enormous agricultural and economic values in sustainable agriculture. Up to present time, rhizobia are classified in to diverse taxonomic groups, distributing in 17 genera (118 species) of the alpha (α), beta (β) and gamma (γ) subclasses of Proteobacteria. The classification of rhizobia is becoming increasingly complex and is revised periodically because of the discovery of new rhizobial members in the other genera and species, the proposal of novel rhizobial genera and species as well as the criteria used for classification. An assessment of rhizobial diversity provides pivotal information in understanding the horizontal gene transfer among bacterial genera and species, the bacterial evolution and the symbiotic effectiveness.

The main concepts of this book present the background knowledge of rhizobia, the broad perspective on rhizobial diversity, the information on characteristics specific to each group of rhizobia, the relation between rhizobial groups and genetic factors contributed to rhizobial diversity, the contemporary methods for examination of rhizobial diversity, the plant-growth-promoting traits of rhizobia and the application of rhizobia. In the first chapter, classification and taxonomy of rhizobia are provided with general information of rhizobia, criteria used in classification of rhizobia, symbiotic gene transfer among rhizobial members, non-symbiotic rhizobia and symbiotic promiscuity of rhizobia. A compiled list of rhizobial species with their hosts is also included. The second chapter describes phenotypic diversity of rhizobia based on numerical analysis, enzyme production and serogroups. The third chapter is about symbiotic variation and plant-growth promoting traits of rhizobia including production of phytohormones, siderophores and ammonia, phosphate-solubilizing activity and production of ACC deaminase. The forth to eight chapters contribute to genotypic diversity of rhizobia, separating molecular techniques used for examination. The techniques listed in this book are the most frequently used ones including plasmid profile, PCR fingerprinting, PCR-RFLP, RFLP and sequence analysis. The details of each technique include principle concept, application to rhizobia, advantages and limitations as well as comparison of resolution level and consistency. The ninth chapter focuses on the application of rhizobia. The uses of rhizobia in agriculture and bioremediation, co-inoculations of rhizobia and other plant-growth-promoting rhizobacteria as well as influence of inoculants on genotypic diversity of indigenous rhizobia are involved.

I hope the book can bring the interesting information and ideas to readers world-wide. From background to specific sections, it may facilitate the proper and efficient experiments related to rhizobial and bacterial diversity.

Acknowledgement

Declared none.

CONFLICT OF INTEREST

The author confirms that this chapter content has no conflicts of interest.

Neelawan Pongsilp, Ph.D.
Department of Microbiology
Faculty of Science
Silpakorn University-Sanam Chandra Palace Campus
Nakhon Pathom
Thailand

List of Contributors

Author(s):
Neelawan Pongsilp
Department of Microbiology
Faculty of Science, Silpakorn University
Sanam-Chandra Palace Campus Nakhon Pathom
Thailand




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